PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000587.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 292aa    MW: 33140.3 Da    PI: 9.6107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000587.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47e-40902083130
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssa 82 
                               kkdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl++++ aik+l+++      +ss+asec         
  Itr_sc000587.1_g00005.1  90 SKKDRHSKITTAHGPRDRRMRLSLDVAREFFDLQDTLGFDKPSKTLDWLLTKSNSAIKDLASSlgltnsPSSAASEC--------- 166
                              69*************************************************************99954444444455......... PP

                      TCP  83 snsssgkaaksaakskksqksaasalnlakesrakarararertrekm 130
                                      +k+++k+ ++++  a++ +l kesr+kar+rarert++k+
  Itr_sc000587.1_g00005.1 167 ------CDEKKKKKKARPPRIRAAFMALTKESRKKARERARERTKKKK 208
                              ......2344555677888888889********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3390208IPR005333Transcription factor, TCP
PROSITE profilePS5136934.01691149IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.969190207IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQHPSSNNSL NNYFNYYNSP ILSPSSSSLY HIPSSPIHYE DELLLLQALI LQQQQQSQPL  60
IIEEEESNKT QITIPDPPYK NHENGGPKKS KKDRHSKITT AHGPRDRRMR LSLDVAREFF  120
DLQDTLGFDK PSKTLDWLLT KSNSAIKDLA SSLGLTNSPS SAASECCDEK KKKKKARPPR  180
IRAAFMALTK ESRKKARERA RERTKKKKLD AIIMGENKGG MFSQLQEEEF SSQSQMGSHC  240
VNKEVSGTYQ QNNGGIFSQQ LQELEVELLS SHFHIHVNNQ LSPFRDFPPG NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192207RKKARERARERTKKKK
2192208RKKARERARERTKKKKL
3193208KKARERARERTKKKKL
4201207ERTKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8C8808e-37A0A0J8C880_BETVU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-25TCP family protein